PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G40740.1
Common NameATWRKY55, T7D17.8, WRKY55
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 292aa    MW: 32488.8 Da    PI: 8.049
Description WRKY DNA-binding protein 55
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G40740.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.2e-27173232258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H++
  AT2G40740.1 173 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTC 232
                  8****************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26164233IPR003657WRKY domain
SuperFamilySSF1182903.53E-25169233IPR003657WRKY domain
SMARTSM007741.6E-35172234IPR003657WRKY domain
PfamPF031063.8E-25173232IPR003657WRKY domain
PROSITE profilePS5081120.059173230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0009029anatomystamen
PO:0009047anatomystem
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM  60
LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR YGGSTSSQGT EAMFQTQLMA  120
VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK  180
YGQKEILGSR FPRAYYRCTH QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA  240
SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21173232968OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266052_at0.0
Expression AtlasAT2G40740-
AtGenExpressAT2G40740-
ATTED-IIAT2G40740-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G40740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G40740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565750.0DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181606.10.0WRKY DNA-binding protein 55
SwissprotQ9SHB50.0WRK55_ARATH; WRKY transcription factor 55
TrEMBLC0SV810.0C0SV81_ARATH; Uncharacterized protein At2g40740 (Fragment)
STRINGAT2G40740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Hass C, et al.
    The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
    EMBO J., 2004. 23(16): p. 3290-302
    [PMID:15282545]
  4. Tosti N, et al.
    Gene expression profiles of O3-treated Arabidopsis plants.
    Plant Cell Environ., 2006. 29(9): p. 1686-702
    [PMID:16913859]
  5. Yamaguchi Y,Huffaker A,Bryan AC,Tax FE,Ryan CA
    PEPR2 is a second receptor for the Pep1 and Pep2 peptides and contributes to defense responses in Arabidopsis.
    Plant Cell, 2010. 22(2): p. 508-22
    [PMID:20179141]
  6. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  7. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]