PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo30G0003900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

FAR1

Protein Properties

Length: 868aa MW: 97393.7 Da PI: 7.469

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo30G0003900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.6	2.8e-25	117	206	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYAk++GF++r ++ + s+r+g + r+fvCsk+g+r + +kk +++++ +r+etr+gC a +k+k+ dgk+++++l+ HnH+la Spipo30G0003900 117 CYSEYAKKMGFTIRWDNRTLSRRTGVTLARRFVCSKQGRRGDGQKKrHSQAKYHREETRCGCLAYMKIKLAGDGKYRIIELNATHNHPLA 206 7*************************************99888846777789********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-22	117	206	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.1E-30	455	549	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	735	769	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	736	763	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MEGEEQLHDD PHEGNDAPAQ VDSAGETASE APDDLSAEKA DHGSLPTSNA FVRDNHNQAQ 60 LAVINEGSVN LPPADQKSFV RPAAPVNELD NRERNGNAQM DPVIGMAFET ENAAYDCYSE 120 YAKKMGFTIR WDNRTLSRRT GVTLARRFVC SKQGRRGDGQ KKRHSQAKYH REETRCGCLA 180 YMKIKLAGDG KYRIIELNAT HNHPLASQVP FNYTLANLVL YNHHPLANQV PGIHPVPIQI 240 ANLRSLPNQV PNIRPVSIQV PSIHHPLPPA TQVPSVHPPA AAQASGIRPR PNQVPYNHPV 300 AVFVPIGPQQ VQSHHLAGKS PGNQHAGHVV IMQRVPGAQG SASGKTKRKR KAAVSGAAAD 360 DDDKLEGVSP DVDPQITELE GLGILPADAR NYLPVKRTNP MQKSDVDSLL EYFRSKQARS 420 SSFFYSFQLD LDEKITNVFW MDGRMKTDYA RFGDVLCFDT TYRMNDYGRP LALFVGVNHH 480 KQMVVFGAAL IYDETAYSFR WVFRSFLEAV SGKRPATLLT DESAAILSAA ASEFRGTPHR 540 LCVWHLYQNA TKNLAKVFTG SKDFDDDFGR CIYDHEVEAD FVQGWNAMLE KYNLVENSWL 600 RHRFRERERW APAHGQAVFC ADIHSAQHRE RMNRELRRYL SSARDMESFL QGFDRFLDDR 660 RSKELEASSK MTKSSPYAPP VSIIQQAARV YTAAAFDMFM AEYVAGLECL VRERKFDGSA 720 QILTVEDGRG HKHAVKVNLE EETLSCSCSK FDRAGILCGH VLTCITKKLR SIPDRYILRR 780 WTRCAGNVSP SSDPTVAADV DDQRDLLSWR YGSLVHDFVQ LSVRAAEDEE IYSCALKHKE 840 AMSEEMEKLF KEKTSSLSYH LFGEHVW*

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MEGEEQLHDD PHEGNDAPAQ VDSAGETASE APDDLSAEKA DHGSLPTSNA FVRDNHNQAQ  60
LAVINEGSVN LPPADQKSFV RPAAPVNELD NRERNGNAQM DPVIGMAFET ENAAYDCYSE  120
YAKKMGFTIR WDNRTLSRRT GVTLARRFVC SKQGRRGDGQ KKRHSQAKYH REETRCGCLA  180
YMKIKLAGDG KYRIIELNAT HNHPLASQVP FNYTLANLVL YNHHPLANQV PGIHPVPIQI  240
ANLRSLPNQV PNIRPVSIQV PSIHHPLPPA TQVPSVHPPA AAQASGIRPR PNQVPYNHPV  300
AVFVPIGPQQ VQSHHLAGKS PGNQHAGHVV IMQRVPGAQG SASGKTKRKR KAAVSGAAAD  360
DDDKLEGVSP DVDPQITELE GLGILPADAR NYLPVKRTNP MQKSDVDSLL EYFRSKQARS  420
SSFFYSFQLD LDEKITNVFW MDGRMKTDYA RFGDVLCFDT TYRMNDYGRP LALFVGVNHH  480
KQMVVFGAAL IYDETAYSFR WVFRSFLEAV SGKRPATLLT DESAAILSAA ASEFRGTPHR  540
LCVWHLYQNA TKNLAKVFTG SKDFDDDFGR CIYDHEVEAD FVQGWNAMLE KYNLVENSWL  600
RHRFRERERW APAHGQAVFC ADIHSAQHRE RMNRELRRYL SSARDMESFL QGFDRFLDDR  660
RSKELEASSK MTKSSPYAPP VSIIQQAARV YTAAAFDMFM AEYVAGLECL VRERKFDGSA  720
QILTVEDGRG HKHAVKVNLE EETLSCSCSK FDRAGILCGH VLTCITKKLR SIPDRYILRR  780
WTRCAGNVSP SSDPTVAADV DDQRDLLSWR YGSLVHDFVQ LSVRAAEDEE IYSCALKHKE  840
AMSEEMEKLF KEKTSSLSYH LFGEHVW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1ZJM3	0.0	A0A1D1ZJM3_9ARAE; Protein FAR1-RELATED SEQUENCE 5 (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	8e-80	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Spipo30G0003900