PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G06250.1 | ||||||||
Common Name | F28L1.19, FRS7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 764aa MW: 87809.9 Da PI: 8.1499 | ||||||||
Description | FAR1-related sequence 7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.7e-20 | 42 | 116 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnH+l AT3G06250.1 42 DYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 116 69**************************************876..............589***************************98 PP | |||||||
2 | FAR1 | 67.6 | 3.1e-21 | 204 | 280 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnH+l p AT3G06250.1 204 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 280 6***************************************9994..............799***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-16 | 42 | 116 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.0E-16 | 204 | 280 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.4E-25 | 376 | 468 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.373 | 650 | 686 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-8 | 657 | 683 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-8 | 661 | 688 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MVVKTYPLGM VGTNNGIAEN EGDSGLEPYV GLEFDTAEEA RDYYNSYATR TGFKVRTGQL 60 YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT GKWVLDQIQK EHNHDLGGHI 120 EEAQTTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEDSD 180 GQTQPKATEP YAGLEFNSAN EACQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK 240 EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP GKKNAGMKKI TDDVTGGLDS 300 VDLIELNDLS NHISSTRENT IGKEWYPVLL DYFQSKQAED MGFFYAIELD SNGSCMSIFW 360 ADSRSRFACS QFGDAVVFDT SYRKGDYSVP FATFIGFNHH RQPVLLGGAL VADESKEAFS 420 WLFQTWLRAM SGRRPRSMVA DQDLPIQQAV AQVFPGTHHR FSAWQIRSKE RENLRSFPNE 480 FKYEYEKCLY QSQTTVEFDT MWSSLVNKYG LRDNMWLREI YEKREKWVPA YLRASFFGGI 540 HVDGTFDPFY GTSLNSLTSL REFISRYEQG LEQRREEERK EDFNSYNLQP FLQTKEPVEE 600 QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFSASNLN 660 ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVTSQDL 720 KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.19021 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 13430715 | 0.0 | ||||
Genevisible | 256404_at | 0.0 | ||||
Expression Atlas | AT3G06250 | - | ||||
AtGenExpress | AT3G06250 | - | ||||
ATTED-II | AT3G06250 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G06250.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G06250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF360270 | 0.0 | AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds. | |||
GenBank | ATAC018907 | 0.0 | AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence. | |||
GenBank | AY150446 | 0.0 | AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001325737.1 | 0.0 | FAR1-related sequence 7 | ||||
Refseq | NP_001325738.1 | 0.0 | FAR1-related sequence 7 | ||||
Refseq | NP_566278.1 | 0.0 | FAR1-related sequence 7 | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A178VME0 | 0.0 | A0A178VME0_ARATH; FRS7 | ||||
STRING | AT3G06250.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5730 | 22 | 39 | Representative plant | OGRP30 | 12 | 351 |
Link Out ? help Back to Top | |
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Phytozome | AT3G06250.1 |
Entrez Gene | 819799 |
iHOP | AT3G06250 |
wikigenes | AT3G06250 |
Publications ? help Back to Top | |||
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