PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0122100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 497aa    MW: 52767.1 Da    PI: 6.6936
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0122100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-11245301155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g krk  + g ++ +e+Aa+a++ a++k++g
  Spipo2G0122100 245 SSYRGVTRHRWTGRYEAHLWDnTCVrEGmKRKGRQ-GGYDREEKAARAYDLAALKYWG 301
                     67*******************66665557778877.669999**************98 PP
2AP247.64.1e-15345395255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Spipo2G0122100 345 AYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 395
                     69***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-8245301IPR001471AP2/ERF domain
CDDcd000183.61E-17245311No hitNo description
SuperFamilySSF541712.48E-14245311IPR016177DNA-binding domain
SMARTSM003806.1E-21246315IPR001471AP2/ERF domain
PROSITE profilePS5103217.688246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12246311IPR001471AP2/ERF domain
PRINTSPR003672.9E-6247258IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17344404IPR016177DNA-binding domain
CDDcd000187.13E-21344405No hitNo description
SMARTSM003807.4E-31345409IPR001471AP2/ERF domain
PfamPF008472.8E-9345395IPR001471AP2/ERF domain
PROSITE profilePS5103219.23345403IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18345404IPR001471AP2/ERF domain
PRINTSPR003672.9E-6385405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAPEDSTGPS ICNDADSYFW YNWQPFSIPQ PEMFIPSPAD ATSHGTSSST ASNNCRNAGG  60
GGHNGWFLPF PAAAASPTGC SPHEEDSAAP ASSHSFLLHS AGDWHPFVYY GGEAVGDAPS  120
EVPRLEGFLS ARRASSPPPP SCAVVETMGS SLGATTGHCY YDEEQRAAGG EALGAKPGKS  180
SPDEDSKSDN GNRLSQSGRS FDGAAGISLT CAHPVAAVAL PPGGDVSEDG KSTGTALLGT  240
GQRSSSYRGV TRHRWTGRYE AHLWDNTCVR EGMKRKGRQG GYDREEKAAR AYDLAALKYW  300
GPTAATNFPA SNYAQEIEEM KDVNRQEFIA SLRRKSTGFS RGASAYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFTTEE EAAEAYDIAA IKFRGVNAIT NFELSRYNIE AIACTELPIG  420
SSAKRLKLSP PAGRQHPHRE APFPEESPPD PAVAASFLHA ILQARPLSGG SPTPAVAHAL  480
WAPPVGAGRS DQAHVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793348.31e-117AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A200PUI01e-116A0A200PUI0_9MAGN; AP2/ERF domain
STRINGXP_008793348.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-100AINTEGUMENTA-like 5