PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0118800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20478.2 Da PI: 11.0946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.7e-21 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ykG r+++ +grW+AeIrdp++ kr++lg+++t eeAa+a++aa++k++g Spipo2G0118800 38 SIYKGLRRRP-WGRWAAEIRDPRK---GKRIWLGTYDTQEEAAAAYDAAARKIRG 88 57********.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.34E-21 | 38 | 95 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-23 | 38 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-15 | 38 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-30 | 39 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAIASTSSPA ASLDVHEKNS GEVKLGGGEG RKKRKKKSIY KGLRRRPWGR WAAEIRDPRK 60 GKRIWLGTYD TQEEAAAAYD AAARKIRGSK AKLNFIYGGA GETPATPTKR SPQAAAQNFL 120 EMDTTREGRE IRGGNGDGPL PGLWDPMEIL SLTFDSWSRP SSLFDRRLPG SARARKSFSS 180 LKISIAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 40 | 95 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | RKKRKKK |
2 | 30 | 45 | RKKRKKKSIYKGLRRR |
3 | 31 | 35 | KKRKK |
4 | 32 | 46 | KRKKKSIYKGLRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 6e-15 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0118800 |