PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G03800.1 | ||||||||
Common Name | ATERF10, ERF077, ERF10, ERF-10, F21M11.27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26392.5 Da PI: 4.8365 | ||||||||
Description | ERF domain protein 10 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp++ +kr++lg+f t eeAa+a++ a+ +++g AT1G03800.1 52 RYRGVRRRP-WGRYAAEIRDPVK---KKRVWLGSFNTGEEAARAYDSAAIRFRG 101 69*******.**********654...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-35 | 52 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 52 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.474 | 52 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 52 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.52E-33 | 52 | 109 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-22 | 52 | 110 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.8E-10 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000005 | anatomy | cultured plant cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTTEKENVTT AVAVKDGGEK SKEVSDKGVK KRKNVTKALA VNDGGEKSKE VRYRGVRRRP 60 WGRYAAEIRD PVKKKRVWLG SFNTGEEAAR AYDSAAIRFR GSKATTNFPL IGYYGISSAT 120 PVNNNLSETV SDGNANLPLV GDDGNALASP VNNTLSETAR DGTLPSDCHD MLSPGVAEAV 180 AGFFLDLPEV IALKEELDRV CPDQFESIDM GLTIGPQTAV EEPETSSAVD CKLRMEPDLD 240 LNASP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 48 | 110 | 1 | 64 | ATERF1 |
3gcc_A | 2e-21 | 48 | 110 | 1 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 32 | KGVKKRK |
2 | 56 | 75 | RRRPWGRYAAEIRDPVKKKR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G03800 | |||||
AtGenExpress | AT1G03800 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00124 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G03800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | ethylene |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G03800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB047649 | 0.0 | AB047649.1 Arabidopsis thaliana AtERF10 gene for ERF domain protein 10, complete cds. | |||
GenBank | AC003027 | 0.0 | AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence. | |||
GenBank | AY560879 | 0.0 | AY560879.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g03800) mRNA, complete cds. | |||
GenBank | BT029020 | 0.0 | BT029020.1 Arabidopsis thaliana At1g03800 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171876.1 | 1e-180 | ERF domain protein 10 | ||||
Swissprot | Q9ZWA2 | 0.0 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | A0A384KN67 | 1e-179 | A0A384KN67_ARATH; ERF10 | ||||
TrEMBL | Q08A59 | 1e-179 | Q08A59_ARATH; At1g03800 | ||||
STRING | AT1G03800.1 | 1e-179 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G03800.1 |
Entrez Gene | 839173 |
iHOP | AT1G03800 |
wikigenes | AT1G03800 |