PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0101500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 204aa    MW: 23085.7 Da    PI: 10.2178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0101500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-066789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Spipo2G0101500 67 FVCEICNKGFQRDQNLQLHRRGH 89
                    89*******************88 PP
2zf-C2H214.30.00012143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++C k +  +s+ k H + +
  Spipo2G0101500 143 YKCEKCLKKYAVQSDWKAHTKIC 165
                     9******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-86689No hitNo description
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121712.5E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035589108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-8138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MPTEIENTSA MTASNSASGE ASISSTGQQP PPPPPPAKRK RNLPGMPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEVRKRVYVC PEPTCVHHDP  120
ARALGDLTGI KKHFSRKHGE KKYKCEKCLK KYAVQSDWKA HTKICGTREY RCDCGTLFSR  180
YRSYFLPFRC ILPQNCGFRL LVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-21139185349Zinc finger protein JACKDAW
5b3h_F3e-21139185349Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3286011e-41DQ328601.1 Lolium multiflorum putative zinc finger protein ID1 (ID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020242793.11e-116LOW QUALITY PROTEIN: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-105IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A4D6LRJ91e-110A0A4D6LRJ9_VIGUN; Regulatory protein SWI5
TrEMBLK9P0T01e-108K9P0T0_9ROSI; Zinc finger protein
STRINGXP_008338682.11e-108(Malus domestica)
STRINGEMJ055241e-109(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.18e-88C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]