PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0085900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 652aa    MW: 73174.2 Da    PI: 5.0107
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0085900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018623640320
                     ETTTTEEESSHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                     C+ Cg+sF ++  L +H+
  Spipo2G0085900 623 CGTCGESFDSRNKLFVHL 640
                     *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1107.6E-247114IPR001623DnaJ domain
SuperFamilySSF465651.96E-238117IPR001623DnaJ domain
SMARTSM002711.5E-22974IPR001623DnaJ domain
PROSITE profilePS5007618.9581082IPR001623DnaJ domain
CDDcd062572.90E-191071IPR001623DnaJ domain
PfamPF002261.2E-201179IPR001623DnaJ domain
PRINTSPR006254.3E-141230IPR001623DnaJ domain
PRINTSPR006254.3E-143045IPR001623DnaJ domain
PRINTSPR006254.3E-145474IPR001623DnaJ domain
PROSITE patternPS0063605978IPR018253DnaJ domain, conserved site
SuperFamilySSF576673.42E-14345395No hitNo description
SMARTSM004511.8E-4347381IPR003604Zinc finger, U1-type
SMARTSM003555.6350374IPR015880Zinc finger, C2H2-like
PfamPF121711.1E-9350375IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280352374IPR007087Zinc finger, C2H2
SMARTSM0035511621645IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683621650IPR007087Zinc finger, C2H2
PROSITE patternPS000280623645IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVSPGSTSRC LYEVLGVNRD CSLEEIRSAY KKLALRLHPD KVAQSAGGAT DDAEATATFQ  60
ELQHAYDVLR DPKERAWYDA HRSQILFASS RRPAQGANTG SSDDGVFASF FSSFFTKFAT  120
SDGRGPGRAS KSPMDDIGNI YSFFSPSAYS GFSDTGSGFY KVYGDLFSKI YSNEVRFAKE  180
VNHGVDPDEV LEPAPLIGNL DSPYEQWTAF YKYWLGFSTL IDFSWADLYD VREGFNRRVR  240
REMEELNSKA RKKMRREYND TVRSLAAFVK KRDKRVVEML RKKKAEEEER KEEQRKKKEE  300
EKKKKEEEAR LYREAEWAQI DEEDDGSLYD DWYGSEADGK KKNSNSEQEL YCVVCSKKFK  360
SDKQWKNHEQ SKKHKDKVAE LRESLQDEDE ALGVMDDDDD AQVGDGIDVG FDYVQEPSDD  420
SDDGAVNGLS EKFEDGFVFQ EQVVEQEVSD SGDVGLGSED ETVILEAMIS NHRSRKAVSL  480
EQPNVSPGEG GEVPNNDAEG ENSMEHNPRR KGRRTRASKK GNRSKPNGDD AETMHTNGDP  540
DVDDGKRCQD GDEQVKEFAS DSLDQVGSSK RGGRNAGKTL KPQQQRQQRD EIFGVNKEAD  600
SAAKISSKGK KQKGTSKAPS NMCGTCGESF DSRNKLFVHL GDTGHAMLKT R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269282KKRDKRVVEMLRKK
2281297KKKAEEEERKEEQRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZE910.0A0A1D1ZE91_9ARAE; DnaJ subfamily C member 21 (Fragment)
STRINGXP_008791313.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-106DNAJ heat shock N-terminal domain-containing protein