PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G74250.1
Common NameF1O17.8, JJJ1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 630aa    MW: 72475.5 Da    PI: 4.8188
Description DNAJ heat shock N-terminal domain-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G74250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016601620221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C  Cg+ F ++  L++H+ 
  AT1G74250.1 601 ECDRCGEEFESRTKLHKHLA 620
                  5*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.58E-226101IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.9E-23880IPR001623DnaJ domain
SMARTSM002714.9E-221073IPR001623DnaJ domain
CDDcd062571.14E-151170IPR001623DnaJ domain
PROSITE profilePS5007619.3081181IPR001623DnaJ domain
PfamPF002262.0E-201278IPR001623DnaJ domain
PRINTSPR006251.4E-141331IPR001623DnaJ domain
PRINTSPR006251.4E-143146IPR001623DnaJ domain
PRINTSPR006251.4E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.37E-15296350No hitNo description
SMARTSM004511.4E-7305339IPR003604Zinc finger, U1-type
PfamPF121713.5E-10307333IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82308332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280310332IPR007087Zinc finger, C2H2
SMARTSM003555.2600624IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723600629IPR007087Zinc finger, C2H2
PROSITE patternPS000280602624IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MASSSRSEKR CHYEVLGISK ESSPDEIRSS YRRLALQRHP DKLMKAAGLS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHS SAGGSKSGGS VPDLFAFFSP TVYSGYSDTG  120
KGFYKVYYDV FNSVYLNEIK FARTLGLRMD SVREAPIMGN LESPYAQVTA FYNYWLGFCT  180
VMDFCWVDEY DVMGGPNRKS RRMMEEENKK SRKKAKREYN DTVRGLAEFV KKRDKRVIDM  240
LVKKNAEMEK KKEEERERKK KMEKERLERA MNYEEPEWAK AHEGEDEGAG LSELEEEDDD  300
AKRKNEQLYC IVCSKKFKSE KQWKNHEQSK KHKEKVAELR ESFTDYEEEN EEEEIDGPLD  360
SPESVEELHE KLQEELNIDN EERDVKKEVV GEADETDDEY FVAEEDMQGS SESEDEDDEM  420
TLLKKMVSGQ KNKQKNVVSK EEDEDETEVE IEGDTAEFSE FDNQKSTGRN KEAKEERNKQ  480
NAGNDMADDT SKVQIPGEGG NPDENMNATE SASGALADSQ KDEANSMEYD NRKSTGRRRR  540
SKKGKDKNNQ GELNEKSSEA DDTQYVNRDM ESQDYKKAPR SKKSTRGMKT KGTTKKNSSN  600
ECDRCGEEFE SRTKLHKHLA DSGHATVKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A9e-12980268DNAJ
1xbl_A9e-12980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216KKSRKKAKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.525090.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184105690.0
Genevisible260251_at0.0
Expression AtlasAT1G74250-
AtGenExpressAT1G74250-
ATTED-IIAT1G74250-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G74250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G74250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177565.10.0DNAJ heat shock N-terminal domain-containing protein
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A178W8H30.0A0A178W8H3_ARATH; Uncharacterized protein
STRINGAT1G74250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Representative plantOGRP354177
Publications ? help Back to Top
  1. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  2. Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J
    REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1 proteins.
    Plant Signal Behav, 2014. 9(3): p. e28224
    [PMID:24603461]