PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0071600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 289aa    MW: 31349.8 Da    PI: 8.8459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0071600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06260282223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k Fs++ +L+ H  + H
  Spipo2G0071600 260 VCPKCSKAFSDPVSLVMHVERdH 282
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.6E-11458No hitNo description
PROSITE profilePS510397.5891059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.9E-101153IPR000058Zinc finger, AN1-type
PfamPF014285.6E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.00541352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.0E-1190149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.11E-1093145No hitNo description
PROSITE profilePS510398.2798146IPR000058Zinc finger, AN1-type
PfamPF014288.1E-9101141IPR000058Zinc finger, AN1-type
SMARTSM001540.019101142IPR000058Zinc finger, AN1-type
SMARTSM003550.2221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM003556259282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265259287IPR007087Zinc finger, C2H2
PROSITE patternPS000280261282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPEFPNLG RHCSVADCRQ IDFLPFTCDR CNQVLCLDHR SYSRHSCPKA NHQDVTVLIC  60
PLCAASVRLV PSEDPNITWE AHVNTNCDPS NYQKATKKKR CPVPHCKEVL VFSNTIKCRD  120
CGREHCLKHR FGPDHKCPGP KKPEAGFPFM NMMRGSKKGP AATPHSSTGS SWWGSGLLSA  180
ASSIRASAET SLAKLSSATS QTLQKSKDAA PQSSSGGRLV EQCVQCPARF SSVKSLIEHV  240
ERVHESGSRA AARPKIAIDV CPKCSKAFSD PVSLVMHVER DHGGTSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697408.11e-151LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-135SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1D1ZJF81e-166A0A1D1ZJF8_9ARAE; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGXP_008784866.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]