PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G41835.1 | ||||||||
Common Name | SAP11, T11A7.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 31252.4 Da PI: 8.5806 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 214 | 236 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H AT2G41835.1 214 VCPQCGAKFSSVTSLVEHVEKtH 236 6*****************99888 PP | |||||||
2 | zf-C2H2 | 18.4 | 5.9e-06 | 251 | 273 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C++ F+++ +L++Hi + H AT2G41835.1 251 VCPRCSRGFRDPVDLVNHIERdH 273 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 5.49E-12 | 4 | 57 | No hit | No description |
PROSITE profile | PS51039 | 7.82 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.1E-10 | 11 | 52 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 8.1E-7 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.9E-13 | 13 | 49 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.7E-9 | 91 | 142 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.57E-8 | 93 | 142 | No hit | No description |
PROSITE profile | PS51039 | 8.132 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.017 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 8.2E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.01 | 213 | 236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 213 | 241 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF05605 | 1.1E-6 | 215 | 274 | IPR008598 | Drought induced 19 protein type, zinc-binding domain |
PROSITE pattern | PS00028 | 0 | 215 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 217 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 13 | 250 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 250 | 278 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 252 | 273 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC 60 PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEYL TFSNTIKCRD 120 CNVDHCLKHR FGPDHTCPGP RKLPFMGFLS SSTTRKEAKT TRPNKAHPST SSSSSSSRWS 180 NLLSSAEAGI SRLGNDISQK LQFSSSKDNG IVEVCPQCGA KFSSVTSLVE HVEKTHERNK 240 KQNHGNVTVD VCPRCSRGFR DPVDLVNHIE RDHRGTSKA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT2G41835 | |||||
AtGenExpress | AT2G41835 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G41835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G41835 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065272 | 0.0 | AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. | |||
GenBank | AY096620 | 0.0 | AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_850358.1 | 0.0 | zinc finger (C2H2 type, AN1-like) family protein | ||||
Swissprot | Q8VZ42 | 0.0 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A178VRV3 | 0.0 | A0A178VRV3_ARATH; Uncharacterized protein | ||||
STRING | AT2G41835.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 | Representative plant | OGRP1909 | 15 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT2G41835.1 |
Entrez Gene | 818783 |
iHOP | AT2G41835 |
wikigenes | AT2G41835 |
Publications ? help Back to Top | |||
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