PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0069900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 712aa    MW: 75889.5 Da    PI: 5.3673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0069900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08276296526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  Spipo2G0069900 276 PCPDFRK-GACRRGDLCEYAHG 296
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.03E-139145No hitNo description
Gene3DG3DSA:1.25.40.207.6E-1712149IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.32E-1417149IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-952123IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00785686IPR002110Ankyrin repeat
PROSITE profilePS5029717.44956149IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.43491126IPR002110Ankyrin repeat
SMARTSM002480.0391123IPR002110Ankyrin repeat
SMARTSM003561.2E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4275298IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5276296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035643306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MSQTTSETED FSSLLELAAN NDVEGFSRFV ERSPTAIDEI GLWYGRKKGS SQMVLEQRTP  60
LMVAATYGSV DVVKLILLLS VADVNRSCGS DNTTALHCAA SSGSVNAVDV VKRLLAAGAD  120
QKAVDVNGRR PCDVIVVSPH HSDVKVALED LLGSFDQNSH LRISVSTSSS DSPPLSSSLD  180
DDGGSASSDS TSSPKTGKFP DLAPSAAAEK KEYPVDASLP DIKNSIYSTD EFRMFSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDL CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCSR RVCFFAHTAE ELRPLYMSTG SAVPSPRSSS AAASAMEMAA  360
AAMSMLPGSP SSLSLMSMGA FTPPISPSAA NGISPHSSLV WPQSNVPTLS LPGSSRLRSS  420
VSARDMPVDE FTASPEYDSQ QLMNEFSGYS SAHSRLGSLM SNLPGRSKAM APSNLDDLFS  480
AEMGSSPRYD SDQGAMFSSS HEAAVLNQFQ QQQHQHQGLL SPINPSIFSP KSVDSPFAVG  540
RSSLLQASLA MASSGRMSPR SVESHSPMSG RLAAFAQLEK QHQQQQQLRS LSSRDLGSGS  600
PASPSMSMWG SPGGKLDWGV NGDELGLGSS AFRQPPSSSF ELGSGGEEPD LSWVQSLVKE  660
SPSEANDEVA VTAAGTACDG PTSSNLPAEG VDQTVLGAWL EQMQLDQLVA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909716.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1D1Z2G10.0A0A1D1Z2G1_9ARAE; Zinc finger CCCH domain-containing protein 24
STRINGEMJ058250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]