PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0057900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WRKY

Protein Properties

Length: 360aa MW: 39761.4 Da PI: 10.4863

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0057900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	293	350	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh Spipo2G0057900 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHA 350 9**********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.3E-18	244	289	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	6.6E-34	279	350	IPR003657	WRKY domain
PROSITE profile	PS50811	30.159	286	352	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-27	289	350	IPR003657	WRKY domain
SMART	SM00774	4.3E-39	291	351	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	293	349	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEEVEEANRV AVESSQRVLS LLSQPQDQLQ SENIVVETGK AVSKFKRVAS LVSNLLGHAR 60 FRKQKPVQTH LPRKIFLDNP TVPYGAESSV TPLQLLPRGL LGRPSSEMDA PARMALPLAQ 120 KLSGSSFLEL DSPARGAFQV SPLVHSITPF QYLQHQNSQR FQLLLQQQQQ QQHMNLHSDV 180 FSRSNSSINL KLEGSSCTPT MSSTRSFISS LSMDGSVASL NGSGFHLIGV PQSSDRLGLQ 240 PPSKRKCTGR GEDGNGKCTI SGRCHCPKRR KLRVKRSIKV PAISNKLADI PPDEYSWRKY 300 GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHA RTLSRSATS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEEVEEANRV AVESSQRVLS LLSQPQDQLQ SENIVVETGK AVSKFKRVAS LVSNLLGHAR  60
FRKQKPVQTH LPRKIFLDNP TVPYGAESSV TPLQLLPRGL LGRPSSEMDA PARMALPLAQ  120
KLSGSSFLEL DSPARGAFQV SPLVHSITPF QYLQHQNSQR FQLLLQQQQQ QQHMNLHSDV  180
FSRSNSSINL KLEGSSCTPT MSSTRSFISS LSMDGSVASL NGSGFHLIGV PQSSDRLGLQ  240
PPSKRKCTGR GEDGNGKCTI SGRCHCPKRR KLRVKRSIKV PAISNKLADI PPDEYSWRKY  300
GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHA RTLSRSATS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-21	287	349	10	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008805954.1	1e-151	protein WRKY1-like isoform X1
Swissprot	Q9SR07	1e-101	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2H3YYT4	1e-150	A0A2H3YYT4_PHODC; protein WRKY1-like isoform X1
STRING	XP_008805954.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	2e-90	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	Spipo2G0057900

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]