PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04670.1 | ||||||||
Common Name | ATWRKY39, F7O18.30, WRKY39 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 36718.7 Da PI: 9.7777 | ||||||||
Description | WRKY DNA-binding protein 39 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8e-31 | 263 | 320 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ AT3G04670.1 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 320 9*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.2E-15 | 222 | 259 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.9E-33 | 249 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.356 | 256 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 259 | 320 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-37 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 263 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR 60 STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM VPASAVYNEM EPKHQLGHPS 120 LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS 180 NGSRSFVSSL SMDASVTDYD RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR 240 KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE 300 RCIDETSMLI VTYEGEHNHS RILSSQSAHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 254 | 319 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.18563 | 0.0 | flower| root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258803_at | 0.0 | ||||
Expression Atlas | AT3G04670 | - | ||||
AtGenExpress | AT3G04670 | - | ||||
ATTED-II | AT3G04670 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group II-d | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT2G14610(A), AT3G24500(A) |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY053420 | 0.0 | AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds. | |||
GenBank | AY133586 | 0.0 | AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566236.1 | 0.0 | WRKY DNA-binding protein 39 | ||||
Swissprot | Q9SR07 | 0.0 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | A0A178V8X7 | 0.0 | A0A178V8X7_ARATH; WRKY39 | ||||
STRING | AT3G04670.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3885 | 23 | 59 | Representative plant | OGRP1817 | 15 | 41 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04670.1 |
Entrez Gene | 819625 |
iHOP | AT3G04670 |
wikigenes | AT3G04670 |