PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0057700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 139aa    MW: 15048.1 Da    PI: 10.5281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0057700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-212070256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g+
  Spipo2G0057700 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARNLRGP 70
                    69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.60E-271976No hitNo description
SuperFamilySSF541714.9E-222078IPR016177DNA-binding domain
PfamPF008476.9E-142069IPR001471AP2/ERF domain
PROSITE profilePS5103222.2732077IPR001471AP2/ERF domain
SMARTSM003808.4E-362083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-312077IPR001471AP2/ERF domain
PRINTSPR003671.5E-102132IPR001471AP2/ERF domain
PRINTSPR003671.5E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
GGDSGVMVGS PAEGGKEAAH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF DTAEEAARAY  60
DEAARNLRGP KAKTNFGHLL SLSPPSLSSS MTSSSTYLPM PQPWRTGRFV VGADIWDLSS  120
GMAASIPVAG QELLPMQMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-211582977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802835.13e-37ethylene-responsive transcription factor 11-like
RefseqXP_010278126.12e-37PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotO803394e-31ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1D1Z1401e-36A0A1D1Z140_9ARAE; Ethylene-responsive transcription factor 3
TrEMBLA0A426XL983e-37A0A426XL98_ENSVE; Uncharacterized protein
TrEMBLA0A444E4D84e-37A0A444E4D8_ENSVE; Uncharacterized protein
STRINGXP_008802835.11e-36(Phoenix dactylifera)
STRINGXP_010278126.16e-37(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.16e-23ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]