PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g41760.1
Common NameLOC4339208, OJ1118_C04.8, Os05g0497200, OsJ_19060, OSNPB_050497200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 190aa    MW: 19789.3 Da    PI: 10.1626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g41760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-192271255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ eAa a+++a+ +l+g
  LOC_Os05g41760.1 22 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 71
                      6********.**********883....5**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.19E-292178No hitNo description
PfamPF008473.4E-122271IPR001471AP2/ERF domain
SMARTSM003804.2E-342285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-292279IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-212279IPR016177DNA-binding domain
PROSITE profilePS5103221.4962279IPR001471AP2/ERF domain
PRINTSPR003671.0E-92334IPR001471AP2/ERF domain
PRINTSPR003671.0E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MELDMGAGGG GGVVGGGRAE AHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TYDTPVEAAL  60
AYDRAAVALR GVKARTNFGS GSSGGGGVGG HGHGHSHAQL PQLHHRMHPP RPPQGPGHFG  120
GLDISHPSPW HYVYFPARVQ AMAPAAAGHV AAHVAASLPS TTLELRTGPS AGELPFDLNE  180
PPPALLFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-202278562ATERF1
3gcc_A8e-202278562ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.802840.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75K84
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g41760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g41760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085230.0AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423930.0AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638389.11e-132ethylene-responsive transcription factor 12
TrEMBLA0A0E0PPG21e-131A0A0E0PPG2_ORYRU; Uncharacterized protein
TrEMBLA2Y6451e-131A2Y645_ORYSI; Uncharacterized protein
TrEMBLQ75K841e-131Q75K84_ORYSJ; Os05g0497200 protein
STRINGORUFI05G22840.11e-131(Oryza rufipogon)
STRINGOS05T0497200-011e-131(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-24ERF domain protein 12