PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0038200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 22684.4 Da PI: 9.5856 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 36 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eEd+l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Spipo2G0038200 36 RGNFSGEEDKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNHWNTHL 81 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-10 | 17 | 41 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-22 | 17 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.135 | 17 | 30 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.403 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 36 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-11 | 38 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 42 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTSFDRLRLS ESDGLLRCSK SCRLRWTNYL RPGIKRGNFS GEEDKLIVHL QALLGNRWAA 60 IASYLPERTD NDIKNHWNTH LKKKLRRTKA GGGGGGGSAG RGQWERRLQE DIHVAERALR 120 EALSPESSAA VSEACNSIVT LGRGQREALA STAGYAYCSA HNISRLLQGW PESKPNSELT 180 HLTTLCDGGG GGGSVSGPTN DVVVTPGSTN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 17 | 85 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953285.1 | 5e-64 | myb-related protein 306-like | ||||
Swissprot | P81392 | 9e-58 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | B9H0F8 | 4e-62 | B9H0F8_POPTR; Uncharacterized protein | ||||
STRING | XP_008341573.1 | 2e-63 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 4e-56 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0038200 |
Publications ? help Back to Top | |||
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