PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0030800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 335aa    MW: 36173.7 Da    PI: 9.9849
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0030800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1359154186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     +W++  + aLi+a  e+  +l+rg+l+ ++W+ev++++            ++  ++  qCk++ + l+k+yk +k++ ++   ++  ++++fd+l
  Spipo2G0030800  59 CWSEGATAALIDAWGERYLELSRGNLRHKDWQEVADVVnaarrhhdgcYNGKAPKTHAQCKNRVDTLKKKYKLEKARLSSAGGPAAGKWVFFDRL 153
                     7******************************************99999999999**************************9889999*******9 PP

        trihelix  86 e 86 
                     +
  Spipo2G0030800 154 H 154
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2357156No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEEDDGRSS QPSTGSSDDA NGGAAAPPPW RGAAVEVAAA AATGRRRRSG GGSGGREDCW  60
SEGATAALID AWGERYLELS RGNLRHKDWQ EVADVVNAAR RHHDGCYNGK APKTHAQCKN  120
RVDTLKKKYK LEKARLSSAG GPAAGKWVFF DRLHHLIGAA TSAPKAQIPP PVPVAAAAAR  180
SLQHHFQKKK QLPTLVGAAA AAAAAAAAAP PSPESSESFL PETPKNKKRG SPPPPPLVTI  240
AKRAVAAEED LREEDLKELT GAILNLGEVY ERVETSKLKQ AVEMEKRRME FTKELELQRM  300
QFFVKTQMEL TQLKRRRRSI PDAMDNNSHS DNTA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LJG87e-43ASIL2_ARATH; Trihelix transcription factor ASIL2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.12e-386B-interacting protein 1-like 1