PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G54060.1
Common NameASIL1, F15I1.14
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 383aa    MW: 41731.6 Da    PI: 9.064
Description 6B-interacting protein 1-like 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G54060.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.5e-1793179186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ +++Liea  ++ ++ ++g lk+++W+ev++ +   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++++f++le
  AT1G54060.1  93 CWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 179
                  7*************************************99999999**************************98..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2492181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001170developmental stageseed development stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQPGLSSQS PSMNALALVV  60
HTPSVTGGGG SGNRNGRGGG GGSGGGGGGR DDCWSEEATK VLIEAWGDRF SEPGKGTLKQ  120
QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES  180
LIGGTTTFIA SSKASEKAPM GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK  240
RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA  300
ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ  360
RGERRIVDDD DDRNGKNNGN VSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17689RGGGGGSGGGGGGR
2227240KRGSDSMRWHFRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.197410.0flower| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306956410.0
Genevisible263152_at0.0
Expression AtlasAT1G54060-
AtGenExpressAT1G54060-
ATTED-IIAT1G54060-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}.
Functional Description ? help Back to Top
Source Description
TAIRMember of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Function -- GeneRIF ? help Back to Top
  1. ASIL1 is a regulator that represses the expression of embryonic seed maturation genes in vegetative tissues.
    [PMID: 19155348]
  2. ASIL1 acts as a temporal regulator of seed filling.
    [PMID: 22231199]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G54060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top
Source Target Gene (A: Activate/R: Repress)
ATRM AT1G21970(R), AT1G28300(R), AT1G69180(R), AT2G40220(R), AT3G24650(R), AT3G26790(R), AT3G27660(R), AT4G25140(R), AT5G40420(R), AT5G51210(R)
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9SYG2
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: Reduced growth of leaves, petioles, stems and siliques. Delayed flowering. {ECO:0000269|PubMed:19155348}.
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G54060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3603250.0AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds.
GenBankAY0563330.0AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds.
GenBankAY0847720.0AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF15I10.0AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564648.10.06B-interacting protein 1-like 1
SwissprotQ9SYG20.0ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A178WDE20.0A0A178WDE2_ARATH; ASIL1
STRINGAT1G54060.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Representative plantOGRP4871684
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Pendle AF, et al.
    Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
    Mol. Biol. Cell, 2005. 16(1): p. 260-9
    [PMID:15496452]
  4. Gao MJ, et al.
    Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings.
    Plant Cell, 2009. 21(1): p. 54-71
    [PMID:19155348]
  5. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]
  6. Willmann MR,Mehalick AJ,Packer RL,Jenik PD
    MicroRNAs regulate the timing of embryo maturation in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1871-84
    [PMID:21330492]
  7. Park HY, et al.
    EMF1 interacts with EIP1, EIP6 or EIP9 involved in the regulation of flowering time in Arabidopsis.
    Plant Cell Physiol., 2011. 52(8): p. 1376-88
    [PMID:21700722]
  8. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  9. Gaudinier A, et al.
    Enhanced Y1H assays for Arabidopsis.
    Nat. Methods, 2011. 8(12): p. 1053-5
    [PMID:22037706]
  10. Gao MJ, et al.
    ASIL1 is required for proper timing of seed filling in Arabidopsis.
    Plant Signal Behav, 2011. 6(12): p. 1886-8
    [PMID:22231199]
  11. Barr MS,Willmann MR,Jenik PD
    Is there a role for trihelix transcription factors in embryo maturation?
    Plant Signal Behav, 2012. 7(2): p. 205-9
    [PMID:22353863]
  12. Li-Beisson Y, et al.
    Acyl-lipid metabolism.
    Arabidopsis Book, 2013. 11: p. e0161
    [PMID:23505340]
  13. We
    Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life.
    Cell Host Microbe, 2014. 16(3): p. 364-75
    [PMID:25211078]
  14. Jin J, et al.
    An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
    Mol. Biol. Evol., 2015. 32(7): p. 1767-73
    [PMID:25750178]