PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0029400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 397aa    MW: 43419.3 Da    PI: 8.7456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0029400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032146167323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      C  Cg+ F+r  +L+ H+ t H
  Spipo29G0029400 146 CASCGEIFNRVNLLELHQATrH 167
                      ******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349144172IPR007087Zinc finger, C2H2
PROSITE patternPS000280146167IPR007087Zinc finger, C2H2
SuperFamilySSF563994.8E-8171395No hitNo description
Gene3DG3DSA:3.90.228.104.6E-9171394IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MTVMADLRSL LPGSRRLFFL LLHLACVFFF PAATSTNQPP PGRRRTPPSE TSTAKSHEPS  60
SVISYFRHVL FFYRPNRKQE QPPPTSLPLS PSSPLHKQLR HYLVYPERAE SDEQNAISRP  120
VGVAKDKATG SVKRPSFTSP ADVFLCASCG EIFNRVNLLE LHQATRHAFS ELHDSDAGKN  180
IVRIIFQSAW KTSVRGGEEA VAPAIHRILK IHHSPRTLAR FEEYRDAVRS RATATRAGGG  240
GGGDEERCAV DGNESLRFYC TTFLCRLGGD GNTATCGSPF CTACWIVRHG FSGKEAEGIS  300
MYATGSGAHA SLPEELEREF AFMRVRRAMI VCRVVAGRVR PREAVAAELG EPAEDRGYDS  360
VAARGTAEDG RGGVADELLV FNPRAVLPCF VVVYGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XG741e-112A0A1D1XG74_9ARAE; Gastrula zinc finger protein xFG20-1
STRINGXP_008800782.12e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-59C2H2 family protein