PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G29660.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 373aa    MW: 41604.4 Da    PI: 8.4765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G29660.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012126149123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ Cg+ F+   +L++Hi   H
  AT2G29660.1 126 FPCNSCGEIFPKINLLENHIAIkH 149
                  89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.078126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
SuperFamilySSF563994.17E-12151372No hitNo description
Gene3DG3DSA:3.90.228.107.2E-5302372IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0031225Cellular Componentanchored component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKD ADYKQKRRKK KLRRVSSSSG SSLSSSWTYL  60
KRVFLSTTRI SKSRNQTHPN VTLTSARSSQ NSLVTLVQPD TTNQPDPETR IHQQTEFEIS  120
SSDEIFPCNS CGEIFPKINL LENHIAIKHA VSELIAGESS TNIVKIIFKS GWPEQGNYKS  180
PVINRILKIH NSSKILTRFE EYREFVKAKA ARSNGGGRRW DDERCVADGN ELLRFYCSTF  240
MCDLGQNGKS NLCGHQYCSI CGIIGSGFSP KLDGIATLAT GWRGHVAVPE EVEEEFGFMN  300
VKRAMLVCRV VAGRVGCDLI DDDDVDKSDG GGYDSLVGQS GNKSGALLRI DDDELLVFNP  360
RAVLPCFVIV YTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543KRRKKKLRR
23641RRKKKL
33642RRKKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.438190.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425694480.0
Genevisible266644_at0.0
Expression AtlasAT2G29660-
AtGenExpressAT2G29660-
ATTED-IIAT2G29660-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G29660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G29660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054960.0AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAY0843790.0AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565684.10.0zinc finger (C2H2 type) family protein
TrEMBLA0A178VU270.0A0A178VU27_ARATH; Uncharacterized protein
TrEMBLO823890.0O82389_ARATH; At2g29660
STRINGAT2G29660.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Representative plantOGRP96611112
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Borner GH,Sherrier DJ,Stevens TJ,Arkin IT,Dupree P
    Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis.
    Plant Physiol., 2002. 129(2): p. 486-99
    [PMID:12068095]
  3. Borner GH,Lilley KS,Stevens TJ,Dupree P
    Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.
    Plant Physiol., 2003. 132(2): p. 568-77
    [PMID:12805588]