PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0019800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 366aa    MW: 41640.8 Da    PI: 4.9362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0019800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-0690113226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k  lC ff + G+C  G +CkF+H+
  Spipo29G0019800  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                      6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15988115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-688113IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.831158196IPR000571Zinc finger, CCCH-type
SMARTSM003564.6158195IPR000571Zinc finger, CCCH-type
PfamPF165437.7E-20215299IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQAVQPKPD AAKAAAKKKK  60
EEEKAREKEL NDLFKVAISQ PKVPLGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQETMEDWDQ ETLEKVVEQK NKEYNQNKPT DIVCRYFLDA VEKKQYGWFW  180
VCPNGGKECH YRHALPPGYV LKSQMKALLE EESEKISIEE EIESQRAKVA TSTPMTPELF  240
MQWKKKKIEE REAGLAAMRA ERAKNDRMSG RELFMSDASL FVDDVDSYEK YQRDEDYDID  300
AEKAKSGPPM EGPSVRSTGR SGMEAAVADD DDDDDDDDDD LDLAELDELE ASLSRASIQI  360
REPGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525195.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2R6R7Z00.0A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_002525195.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-160C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]