PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G20280.1
Common NameF11A3.17
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 371aa    MW: 42389.1 Da    PI: 4.6799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G20280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0690113226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC ff + G+C+ G +CkF+H+
  AT2G20280.1  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-490113IPR000571Zinc finger, CCCH-type
SMARTSM003563.1159196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793159197IPR000571Zinc finger, CCCH-type
PfamPF165434.1E-17217299IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ATKAAAKKKK  60
EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG  120
EKIDIYSDTR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF  180
WSCPNGGKEC HYRHALPPGY VLKSQMKALL EEESSKKLAV EDEIENERAK LQTATQMTPA  240
LFMEWKRKKI AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAC EEYEREREQE  300
ETEQKAKNKE AEAGTSKSSG DAEQSSKEVN EEEEDDDDDD DDLDMDELDE LEASLSKTSI  360
QIREPNDEGS S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.397180.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425691790.0
Genevisible265310_at0.0
Expression AtlasAT2G20280-
AtGenExpressAT2G20280-
ATTED-IIAT2G20280-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G20280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G20280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065691e-109AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence.
GenBankCP0026851e-109CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179618.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A178VPN90.0A0A178VPN9_ARATH; Uncharacterized protein
STRINGAT2G20280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Representative plantOGRP464966
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  2. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]