PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0019700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 439aa    MW: 48033.1 Da    PI: 6.121
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0019700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17176225155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg ++ta  Aa+a+++a+ k++g
  Spipo29G0019700 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGYDTAHAAARAYDRAAIKFRG 225
                      78*******************......55************************997 PP
2AP243.29.8e-14268318155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Spipo29G0019700 268 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEVEAARAYDKAAIKCNG 318
                      89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-15176233IPR016177DNA-binding domain
PfamPF008473.8E-9176225IPR001471AP2/ERF domain
PROSITE profilePS5103217.873177233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-16177233IPR001471AP2/ERF domain
SMARTSM003805.0E-31177239IPR001471AP2/ERF domain
CDDcd000188.21E-11177233No hitNo description
CDDcd000188.18E-26268328No hitNo description
PfamPF008474.0E-9268318IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-17268327IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-16269326IPR001471AP2/ERF domain
PROSITE profilePS5103215.738269326IPR001471AP2/ERF domain
SMARTSM003804.8E-33269332IPR001471AP2/ERF domain
PRINTSPR003674.4E-6270281IPR001471AP2/ERF domain
PRINTSPR003674.4E-6308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MMLDLNFASP HDVPSGDGLQ EIPGNLMDDS GTSNSSVLNA DGSMNAGDED SCSTKSPAPT  60
FCFGILKEGF GDDNEEAEEG EDFAEEVNNS RSHHEVVTKQ LFPLAAAGQQ GYGNGFVPHL  120
VGMAAHMPSS SSASKSSLEE SFCQPAMAEP PKVTTQQQQQ QQQVKKSRRG PRSRSSQYRG  180
VTFYRRTGRW ESHIWDCGKQ VYLGGYDTAH AAARAYDRAA IKFRGVDADI NFALADYDED  240
MKHMRNLTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  300
TEVEAARAYD KAAIKCNGRE AVTNFEPSSY EGEIVSEMDV EAFGRNLDLN LSISQPTDHT  360
PRGEADTERA AEKRPEMPSP AIPGWAWPLH GGGAAPHPVY PFAASSGFSA TAPSPTAAAA  420
RRDYLFPPPA SPHFFHRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750512.11e-140PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A410TEP21e-141A0A410TEP2_ANTAD; SNB
STRINGXP_008789029.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-102related to AP2.7