PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0016400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 35445.6 Da PI: 4.9518 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+ps r +lg++ ta Aa a+++a+ +++g Spipo29G0016400 80 CRYRGVRQRT-WGKWVAEIREPSG---GSRLWLGTYPTALAAALAYDEAAIAIYG 130 78*****999.**********953...3**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 80 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.79E-19 | 80 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-28 | 81 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 81 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-35 | 81 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-19 | 81 | 138 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.6E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGAGRLLTLD SGRKRRPRRR RNGPNSIAET LARWKEINER QLLIGAARGS EKPVGIRKVP 60 AKGSKKGCMK GKGGPENPNC RYRGVRQRTW GKWVAEIREP SGGSRLWLGT YPTALAAALA 120 YDEAAIAIYG SSARLNLGHR AANSDDSSLT YTCSGVLPPR ADNADDAASD ERRPAAPPVK 180 EEPLEGAAAA EEGSFFFPLK TEAAEPPTGA AVGGPSPASE EHHYPGGMID ITDRMLDIDE 240 MLRLMEAEPM DGGGGAPEQG AAAPPFKFDD DDESAGSWAL QQQPLPGDEQ YPDEYFMKPF 300 SSQALTFSLL DERSLFELGS SADMLWQGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 82 | 137 | 6 | 62 | ATERF1 |
3gcc_A | 2e-14 | 82 | 137 | 6 | 62 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | RRPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921034.1 | 1e-62 | dehydration-responsive element-binding protein 2B isoform X1 | ||||
TrEMBL | A0A1D1Y293 | 2e-55 | A0A1D1Y293_9ARAE; Dehydration-responsive element-binding protein 2A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0016400 |