PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0014900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 285aa    MW: 32117.2 Da    PI: 10.3982
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0014900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-141198186
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     +W++  v  L+ea++ ++   +r+klk  +We+v++++    + ++ +++p+qCk+k e+++kry+ +  + +   ++ +s+++++++++
  Spipo28G0014900 11 EWSEGGVVSLLEAYEAKWMLRNRAKLKWSDWEDVARQVsdrcAGTKASKTPNQCKNKVESMKKRYRSESSSIQP--PNFRSSWQFYSRMD 98
                     59*******************************9999988667778899*******************999998..788999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-18999No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKVPDRSRRD EWSEGGVVSL LEAYEAKWML RNRAKLKWSD WEDVARQVSD RCAGTKASKT  60
PNQCKNKVES MKKRYRSESS SIQPPNFRSS WQFYSRMDGL LKGTKAEDND ARAPPLPKVV  120
VDLEMGGNLQ ESNQDDGSST LPDHVLAVEG KNEEKESRGL DSELSTPRSK VPGDVGEGTR  180
RVGNPSKRRG SGNEVAESIR FLAHSILKIE RARMEMQRHS ERMRIEAEIK RGEMELRRTE  240
IVAKTQLQIA KILSRRAKGK NAKCGNPSTR EASVREGTVN WSTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928615.11e-105trihelix transcription factor ASIL1
TrEMBLA0A1D1YBK31e-120A0A1D1YBK3_9ARAE; Uncharacterized protein At4g22160
STRINGXP_008789713.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-62sequence-specific DNA binding transcription factors