PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G54390.1
Common NameT12E18_80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 296aa    MW: 33280.8 Da    PI: 10.0601
Description sequence-specific DNA binding transcription factors
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G54390.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1637120186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v +L+ea+++++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  AT3G54390.1  37 EWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 120
                  5*************************************77666666678899*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2135122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA  60
KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR YRSESATADG SSWPLYPRLD  120
HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN  180
KPEKDAEMDT DSSTPVVKTK VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK  240
EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.351130.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184100590.0
Genevisible251896_at0.0
Expression AtlasAT3G54390-
AtGenExpressAT3G54390-
ATTED-IIAT3G54390-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G54390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G69810
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G54390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843910.0AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400410.0AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063220.0BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001327946.10.0sequence-specific DNA binding transcription factor
TrEMBLA0A1I9LTW10.0A0A1I9LTW1_ARATH; Sequence-specific DNA binding transcription factor
STRINGAT3G54390.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Representative plantOGRP44091421
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]