PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0019400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 278aa    MW: 30166.3 Da    PI: 8.3962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0019400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-097297127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +kt+lC+ f   G C+yG +C+FaHgp
  Spipo27G0019400 72 FKTRLCMKFKS-GSCPYGQNCSFAHGP 97
                     69*******99.*************96 PP
2zf-CCCH291.8e-09132155326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       ++Cr ++ +  C+yG+rC+FaH+
  Spipo27G0019400 132 LKICRKYYNGEDCPYGERCTFAHV 155
                      579******66************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.59E-970102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5077198IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-67197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-1671104IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-87297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-9127155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7129156IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915129157IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7131155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSNDNGFWAQ ARPQEEYEGP QFKRHRPSDD AHVLTDPSRS WQHAPGILSS APPPPNPPQN  60
SSQSSKGSRL FFKTRLCMKF KSGSCPYGQN CSFAHGPEEL RRPPPNWPSL AAGHDDDRMS  120
GNVTDRQRLN KLKICRKYYN GEDCPYGERC TFAHVEPGSL RESSAISVGV TETAPPAAGS  180
GGSGSQEPDA SGSGSCGDGN GSLQKSSSLW KPKMCHKWEP TEPRKYGGLI DAETSAGAAP  240
SRHLSPPEAD AASRPRGFLR LRGLRKISNI YADWIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Y4G21e-116A0A1D1Y4G2_9ARAE; Zinc finger CCCH domain-containing protein 39
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-27C3H family protein