PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0016200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 813aa    MW: 91260.8 Da    PI: 7.5062
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0016200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.5e-2096181190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fY+ YA+++GF + k+ s+++  +g   ++tf C k+g+++++k      +rtr +++tgC+ak++v++++dg w+++ l+l+HnH ++
  Spipo27G0016200  96 QFYSYYAYRIGFGIAKTCSRRK--DGVQHEYTFSCEKSGRPKDKKGL--APKRTRISKKTGCQAKFRVRLNEDGLWHLAFLVLHHNHYCS 181
                      6****************99988..9999**************99988..999***********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1896181IPR004330FAR1 DNA binding domain
PfamPF105511.0E-21298392IPR018289MULE transposase domain
PROSITE profilePS509669.582583621IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-4592618IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5596623IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MKSDQRASSD PKNRHCVYNS SECMEMDEEK GQEQEHFSND PIVVDANEEI EENDLSESSE  60
EVGFSEGQDR VPGPNTVNAL TPKVGMTFKT VDEAYQFYSY YAYRIGFGIA KTCSRRKDGV  120
QHEYTFSCEK SGRPKDKKGL APKRTRISKK TGCQAKFRVR LNEDGLWHLA FLVLHHNHYC  180
SPNESHRYRS HKMTPFHAMP YDAQRLSEGN YAPEATDLST ARLDSSPGDG RAVDSANGAG  240
QFRLGEGDAE AIAEYLARMQ SESPLFFHLM DLDGEGRLKN IFWADTRSRM SYPYFNDVVL  300
LDTSCLSNKN GGVPFASFTG VSHHGSVVFF GGALLCNERP ETYAWLFRAW LASMGGLPPR  360
AIITDKSKSI DSAVLEVFPN ALHRLCIWQI MKRVPEALAG RSNQKAAKER LHDVVFDSLK  420
PDEFEQNWVA MVNEYKLGDS EWLLSLYEER RRWVPAFVKD TFWAGMSGIQ RSDVRAPYFD  480
RFVTSKNSLK QFLPAYEAAL QARYNREFQE EHGGEFHAPL PPPPPLISRL SMEEDFSKAY  540
TLNMFQRFQQ ELQKCVDCTC VLIRKDGAIS TYQVKERVKQ RTYSYEVLFN EDQVEVQCLC  600
RGFEFGGVLC SHAIVVLKEK DVQRAPPRYI CRRWRKSFKE ESRPCCPLTP PSDVLGHQSG  660
RRFERLLAQC LPHLSRLAEI GASFDHRPEQ LLRLLAKVEK KLADARRAQK GKEGARHGGS  720
SCRSTADGSA TLQGNGLVSL SGSSQLVNEA AGSQGLVPYY LVPLGEQPAS AATAAAAAAT  780
SIPPSISSSP NVGDFWGQKD TSFPNIPQLR NQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-109FAR1-related sequence 6