PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G52520.1
Common NameF6D8.26, FRS6
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 703aa    MW: 81603.7 Da    PI: 7.0844
Description FAR1-related sequence 6
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G52520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.6e-2199182189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ l+HnH l
  AT1G52520.1  99 NYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL 182
                  69*****************************************9988.....999********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-1999182IPR004330FAR1 DNA binding domain
PfamPF105511.4E-23297389IPR018289MULE transposase domain
PROSITE profilePS509669.606584620IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-4592616IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MERSESVDED VQASAYLEND EVRERDDPMS DTLRIGEEAL VCSSEHEIDV GFCQNEERKS  60
EEETMGGFDE QSGLLVDERK EFDAPAVGME FESYDDAYNY YNCYASEVGF RVRVKNSWFK  120
RRSKEKYGAV LCCSSQGFKR INDVNRVRKE TRTGCPAMIR MRQVDSKRWR VVEVTLDHNH  180
LLGCKLYKSV KRKRKCVSSP VSDAKTIKLY RACVVDNGSN VNPNSTLNKK FQNSTGSPDL  240
LNLKRGDSAA IYNYFCRMQL TNPNFFYLMD VNDEGQLRNV FWADAFSKVS CSYFGDVIFI  300
DSSYISGKFE IPLVTFTGVN HHGKTTLLSC GFLAGETMES YHWLLKVWLS VMKRSPQTIV  360
TDRCKPLEAA ISQVFPRSHQ RFSLTHIMRK IPEKLGGLHN YDAVRKAFTK AVYETLKVVE  420
FEAAWGFMVH NFGVIENEWL RSLYEERAKW APVYLKDTFF AGIAAAHPGE TLKPFFERYV  480
HKQTPLKEFL DKYELALQKK HREETLSDIE SQTLNTAELK TKCSFETQLS RIYTRDMFKK  540
FQIEVEEMYS CFSTTQVHVD GPFVIFLVKE RVRGESSRRE IRDFEVLYNR SVGEVRCICS  600
CFNFYGYLCR HALCVLNFNG VEEIPLRYIL PRWRKDYKRL HFADNGLTGF VDGTDRVQWF  660
DQLYKNSLQV VEEGAVSLDH YKVAMQVLQE SLDKVHSVEE KQD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.375830.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible262150_at0.0
Expression AtlasAT1G52520-
AtGenExpressAT1G52520-
ATTED-IIAT1G52520-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G52520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G52520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0807750.0AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.
GenBankAY1337760.0AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175661.10.0FAR1-related sequence 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A178WP940.0A0A178WP94_ARATH; FRS6
STRINGAT1G52520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]