PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0007800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 469aa    MW: 50709.3 Da    PI: 4.5814
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0007800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.51.3e-35177277297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                      lfqrl+++eDei++LqG++df+ ++ +       ++d+  fy+++k++++++++k+qlveK+rrLKkK+++ ++k+++gke +f+++hdq +fe
  Spipo27G0007800 177 LFQRLFTDEDEIAILQGFLDFTLQRSAtaahqTHHHDTGPFYDQIKSRLQLDFNKNQLVEKLRRLKKKYRNIMNKMNTGKEYAFKSPHDQATFE 270
                      79*******************988877666645566********************************************************** PP

           DUF573  91 lskkiWg 97 
                      ls++iWg
  Spipo27G0007800 271 LSRRIWG 277
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-32178277IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVTPVAGGEV AAGAVAAGED RPAGFLADDD ELDDSEEDEE EVDEETDELE DEEDEDEEEQ  60
KPPAVLVAPA RVLSGSSSSP STSVVDPVTV PSPNPNGNPA AAAVPGKLNP GINGGGVAAA  120
PADVESVQAV PAADENGGFD TPPDRKRQRT ESGTELVGEG AVAEKKPLAI LEDSRRLFQR  180
LFTDEDEIAI LQGFLDFTLQ RSATAAHQTH HHDTGPFYDQ IKSRLQLDFN KNQLVEKLRR  240
LKKKYRNIMN KMNTGKEYAF KSPHDQATFE LSRRIWGNSI YSRGGGAGPD DDDDDDPTPQ  300
QIGDDHHGTL LSNSDRRRMR RRGRRRAHMG AAAEALLLTP EAPVEVKVAE SHMPSVMASV  360
PNVIEETVRS CLSPLFKELL YSAVGGPMGQ PPPGAAPLAS SGSFPALGRH HYHQPVPPSV  420
GGNPGSLPSA TALDEKWRKQ QILELEVYSK RIELVQDQIK LMLEELRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315325RRRMRRRGRRR
2316321RRMRRR
3316324RRMRRRGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271046.11e-90PREDICTED: probable transcription factor At3g04930
RefseqXP_010271047.11e-90PREDICTED: probable transcription factor At3g04930
TrEMBLA0A1D1YFB21e-117A0A1D1YFB2_9ARAE; Uncharacterized protein
STRINGXP_010271046.14e-90(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-42DNA-binding storekeeper protein-related transcriptional regulator