PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04930.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 396aa MW: 42883.5 Da PI: 4.458 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.4 | 9.5e-38 | 137 | 235 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW+ AT3G04930.2 137 LFQRLWTDEDEIELLRGFLDYmTMHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWN 234 79*******************8899***99999****************************************************************8 PP DUF573 98 s 98 + AT3G04930.2 235 Q 235 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-34 | 138 | 234 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE 60 DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP AGSAVPVSVI PVDSDPKWHR 120 MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS 180 KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII 240 GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS 300 RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM 360 NGTTSMMMAA MGGGFPGLGG GGGGGGGGGF VYNLLY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 302 | KRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.17642 | 0.0 | flower| leaf| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334185084 | 0.0 | ||||
Expression Atlas | AT3G04930 | - | ||||
AtGenExpress | AT3G04930 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04930.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493601 | 0.0 | AB493601.1 Arabidopsis thaliana At3g04930 mRNA for hypothetical protein, partial cds, clone: RAAt3g04930. | |||
GenBank | AC009465 | 0.0 | AC009465.7 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189809.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | Q9CAV7 | 0.0 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A178VGS6 | 0.0 | A0A178VGS6_ARATH; Uncharacterized protein | ||||
STRING | AT3G04930.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G04930.2 |
Entrez Gene | 819653 |
iHOP | AT3G04930 |
wikigenes | AT3G04930 |
Publications ? help Back to Top | |||
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