PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0027000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 620aa    MW: 68495.5 Da    PI: 6.8412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0027000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13465511455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Spipo26G0027000 465 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINDLQ 511
                      799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5152239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15464515No hitNo description
SuperFamilySSF474596.15E-19464524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18465524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKTEKGTVGV GFWEEEDKAM AVAVLGAKAF DYITTVHVSS EGLTAIGGDS DLQEKLVALV  60
DGPNPSGFTW NYAIFWQISR SATGDIVLGW GDGHCREPRQ REDSSQRGWQ QHLDEAHQHM  120
RKQVLQKLSV FAGGSDDENY ALRLDRVTDT EMFFLASMYF SFPRGEGAPG KVFASGNHLW  180
ISDALPNSSL SDFCVRGFLA RSTGMRTIVL VPTTNGVLEL GSVAPVSENA EAMQTIKSIL  240
SSGPAKPVPG GSDRGDSQIT AANASSFGFM PRGEERPRIF GKDLNLGQPQ TDERLSVAKM  300
EEQRQQWDLE SSNGGGGDRI RSPDSRKDLH LLNWTQSHRV GANQAHVNNQ QKFSSGVVIT  360
EADACRRPFG HYSNGAREDP QQSHFPPKRQ RSLPAPLTQP RQIDFSRAAA TSMAVPVESQ  420
PNSLQAEQSG ANLASSKEDR PFPPEERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR  480
FYALRAVVPN ISKMDKASLL GDAISYINDL QRKLKEMESE RERFSDVTVV DARKRVECPF  540
VDVQVVHNEV VVHVSCPLET HPVSKVISVF NEEQIDVVDS KISAGSDTVF HTFVVRPQGS  600
EQLTKDRLVA ALSREANTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27459521264Transcription factor MYC2
5gnj_B2e-27459521264Transcription factor MYC2
5gnj_E2e-27459521264Transcription factor MYC2
5gnj_F2e-27459521264Transcription factor MYC2
5gnj_G2e-27459521264Transcription factor MYC2
5gnj_I2e-27459521264Transcription factor MYC2
5gnj_M2e-27459521264Transcription factor MYC2
5gnj_N2e-27459521264Transcription factor MYC2
5t0f_A4e-26522369188Transcription factor MYC3
5t0q_A4e-26522369188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446454RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_019051449.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1D1ZHC50.0A0A1D1ZHC5_9ARAE; Transcription factor bHLH13
STRINGXP_010242395.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-137bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]