PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0026700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 190aa    MW: 20404.8 Da    PI: 5.1716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0026700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-183383155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++  +++l+g
  Spipo26G0026700 33 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPTPEMAARAYDVGALCLKG 83
                     68*****887.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-123383IPR001471AP2/ERF domain
PROSITE profilePS5103224.1183491IPR001471AP2/ERF domain
SMARTSM003805.6E-343497IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-313492IPR001471AP2/ERF domain
PRINTSPR003674.4E-103546IPR001471AP2/ERF domain
CDDcd000186.34E-313593No hitNo description
PRINTSPR003674.4E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEEEEKASES AAEDSSKSTG SEAASAGGGT RHPVYRGVRK RRWGKWVSEI REPRKKSRIW  60
LGSFPTPEMA ARAYDVGALC LKGRKALLNF PDLIDILPRP SSSTPRDIQS AAAAAAAMSR  120
PPTVTSDSRE LEIALPSSIS SLEEKPSAGG NAEDDFWGEI GELPALGGGR CMPADSKGET  180
WEELWRPSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-182796777Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636470.17e-53PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI28e-47ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U8NGG02e-51A0A1U8NGG0_GOSHI; ethylene-responsive transcription factor ERF023-like
STRINGMigut.N01538.1.p5e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.15e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]