PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G01250.1 | ||||||||
Common Name | ERF023, F6F3.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21050.9 Da PI: 5.8458 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7e-18 | 43 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++ a+ +l+g AT1G01250.1 43 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLKG 93 68*****887.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-12 | 43 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.906 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 44 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 44 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-35 | 44 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-30 | 45 | 102 | No hit | No description |
PRINTS | PR00367 | 5.8E-12 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-12 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSPQRMKLSS PPVTNNEPTA TASAVKSCGG GGKETSSSTT RHPVYHGVRK RRWGKWVSEI 60 REPRKKSRIW LGSFPVPEMA AKAYDVAAFC LKGRKAQLNF PEEIEDLPRP STCTPRDIQV 120 AAAKAANAVK IIKMGDDDVA GIDDGDDFWE GIELPELMMS GGGWSPEPFV AGDDATWLVD 180 GDLYQYQFMA CL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 42 | 104 | 12 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145334943 | 0.0 | ||||
Genevisible | 261059_at | 0.0 | ||||
Expression Atlas | AT1G01250 | - | ||||
AtGenExpress | AT1G01250 | - | ||||
ATTED-II | AT1G01250 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G01250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G01250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023628 | 0.0 | AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_563624.1 | 1e-142 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q1ECI2 | 1e-143 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A178W4W8 | 1e-136 | A0A178W4W8_ARATH; Uncharacterized protein | ||||
STRING | AT1G01250.1 | 1e-141 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7659 | 24 | 39 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G01250.1 |
Entrez Gene | 839322 |
iHOP | AT1G01250 |
wikigenes | AT1G01250 |