PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0015800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 331aa    MW: 37326.4 Da    PI: 6.5707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0015800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12194219126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  Spipo26G0015800 194 YQPDICKDYKETGYCGYGDSCKFMHD 219
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9192225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7193220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12194224IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-14268312IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.82E-14270314No hitNo description
PfamPF139208.8E-9270312No hitNo description
SMARTSM001842.2E-5271308IPR001841Zinc finger, RING-type
CDDcd001627.87E-9271312No hitNo description
PROSITE profilePS5008910.704271309IPR001841Zinc finger, RING-type
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADPGVSDAS DSGPVCNFFR KPLKGRNIRK RKELDEEDEE EERQPSTLPQ KTKKALVHDN  60
KLHFSSGSAS SRRRATTEED DEATESSSTA FHFESSKEIQ VNNDSRATAI LETETAFTHD  120
ARAIREKTLK LAEEKLKGRP QSSGDDKLYR GIHGYMDHKA GFRREQTIAG EKAGGAHGPL  180
RAPVHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKMGWQLE REWDESEKAR  240
KRALALGGGE NDDGGVDDGD SDDDDALPFA CFICREPFED PVVTKCKHYF CEHCALKHYQ  300
RNKKCFVCNQ PTLGIFNTAH EIKKRMAESK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-67104326113317RING finger protein 113A
5z58_M1e-67104326113317RING finger protein 113A
6ff4_t1e-67104326113317RING finger protein 113A
6ff7_t1e-67104326113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-158zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-147C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1D1Y1V01e-160A0A1D1Y1V0_9ARAE; Zinc finger CCCH domain-containing protein 1 (Fragment)
STRINGXP_010265576.11e-158(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-136C3H family protein