PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G01350.1 | ||||||||
Common Name | F6F3.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38710 Da PI: 7.06 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.3e-12 | 201 | 226 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF H+ AT1G01350.1 201 YQPDICKDYKETGYCGYGDSCKFLHD 226 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.57E-9 | 199 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-8 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 200 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-13 | 201 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 201 | 226 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.2E-13 | 262 | 318 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 1.4E-8 | 276 | 318 | No hit | No description |
SuperFamily | SSF57850 | 2.39E-13 | 276 | 319 | No hit | No description |
SMART | SM00184 | 9.2E-5 | 277 | 314 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 5.36E-9 | 277 | 318 | No hit | No description |
PROSITE profile | PS50089 | 10.63 | 277 | 315 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 292 | 301 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034247 | Biological Process | snoRNA splicing | ||||
GO:0045292 | Biological Process | mRNA cis splicing, via spliceosome | ||||
GO:0005684 | Cellular Component | U2-type spliceosomal complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES 60 SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET 120 ETDFNQDARA IRERVLKKAD EALKGNKKKA SDEKLYKGIH GYTDHKAGFR REQTISSEKA 180 GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW 240 EEAEKVRKRN KAMGVEDEDD EADKDSDEDE NALPFACFIC REPFVDPVVT KCKHYFCEHC 300 ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE QGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 8e-68 | 28 | 342 | 13 | 327 | RING finger protein 113A |
5z58_M | 8e-68 | 28 | 342 | 13 | 327 | RING finger protein 113A |
6ff4_t | 8e-68 | 28 | 342 | 13 | 327 | RING finger protein 113A |
6ff7_t | 8e-68 | 28 | 342 | 13 | 327 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.48142 | 0.0 | flower| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186478010 | 0.0 | ||||
Genevisible | 250736_s_at | 0.0 | ||||
Expression Atlas | AT1G01350 | - | ||||
AtGenExpress | AT1G01350 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G01350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G01350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493419 | 0.0 | AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171642.2 | 0.0 | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein | ||||
Swissprot | Q8GX84 | 0.0 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | C0SUR6 | 0.0 | C0SUR6_ARATH; Uncharacterized protein At1g01350 (Fragment) | ||||
STRING | AT1G01350.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11099 | 26 | 34 | Representative plant | OGRP5896 | 17 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT1G01350.1 |
Entrez Gene | 838964 |
iHOP | AT1G01350 |
wikigenes | AT1G01350 |