PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0011600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 358aa    MW: 38537.4 Da    PI: 4.5137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0011600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-18122171255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+++AeIrdp     r  r++lg++ taeeAak +++a+ +l+g
  Spipo26G0011600 122 RFRGVRQRP-WGKYAAEIRDPA----RgIRIWLGTYNTAEEAAKVYDNAAIQLRG 171
                      69*******.**********82....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-11122171IPR001471AP2/ERF domain
PROSITE profilePS5103222.576122179IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20122179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-28122179IPR001471AP2/ERF domain
SMARTSM003803.2E-33122185IPR001471AP2/ERF domain
CDDcd000181.98E-28122181No hitNo description
PRINTSPR003672.4E-9123134IPR001471AP2/ERF domain
PRINTSPR003672.4E-9145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDGSFMAPPV KFSEHRRKLS KFCKASSSKS RQLGVNDPPA PRVVRISVTD PDATDSSGDE  60
EQDPFSFPRH RVKRYVDEIS MEISSAGAGG ATPWSCGSSG KGPRRKAGSR AAGAAAPPCA  120
RRFRGVRQRP WGKYAAEIRD PARGIRIWLG TYNTAEEAAK VYDNAAIQLR GPDAMTNFAA  180
DGSKPTAESP SAGYESGEDS HNLSSPTSVL RYCTKEDPPE HVPQLKKNHP KPEETPPEEV  240
KWMEEEEAEA GNFGGGIFED AGFAEDLGAL LEFEKASFFD EFFCFDDAAT PGIFDPPAED  300
GLFLDGDLAG SFLADGNGDG ELLSSSLRAS TWRFDSGFQD IGDISDMFSS DAALQVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19121178462ATERF1
3gcc_A4e-19121178462ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZKV14e-93A0A1D1ZKV1_9ARAE; Ethylene-responsive transcription factor CRF4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-50cytokinin response factor 4