PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0007100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 386aa    MW: 42231.5 Da    PI: 4.8652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0007100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30160218259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+
  Spipo26G0007100 160 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRTDPDTLVITYTAEHNHP 218
                      79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30145220IPR003657WRKY domain
PROSITE profilePS5081134.119154220IPR003657WRKY domain
SuperFamilySSF1182901.03E-25157220IPR003657WRKY domain
SMARTSM007748.0E-36159219IPR003657WRKY domain
PfamPF031067.6E-25161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEDDGWDLQA VVRGCCGSVR STSEAVATVD PFSFLPVVAK KEKEEEDDLL RYLPEVFSTQ  60
REVHELEELC KPFFTKSFDK QQQKQLSPEG RPSSCSAAHP RPSYDGGAAS LPLQQQQQHQ  120
QHQQIRQPQV RPFSQTPRAK RRKNQQKKVV CQVPADGLSS DMWAWRKYGQ KPIKGSPYPR  180
GYYRCSSSKG CLARKQVERS RTDPDTLVIT YTAEHNHPVP THRNSLAGST RQKFPSSSSS  240
AGSAQNFAGV DGGGTPVGGS DPEPTSSKGT SSSPIYSPTA AGLSPTTPLT SSMEEELLRP  300
QRLTGQKPEG EEAEEEEEEE DDDEENLLLI GDMEILGDDD LMFMDFDQLR DTNAATAFSD  360
GFSERFGSSP HPWMPSGAAT AAGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-22147221680Disease resistance protein RRS1
5w3x_D7e-22147221680Disease resistance protein RRS1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661036.12e-96WRKY transcription factor 22-like
TrEMBLA0A3Q0I2D84e-95A0A3Q0I2D8_PHODC; WRKY transcription factor 22-like
STRINGXP_008797253.17e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-55WRKY family protein