PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo25G0001100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 523aa    MW: 55225.1 Da    PI: 6.9902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo25G0001100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30305363259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Spipo25G0001100 305 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILTTTYEGKHNHP 363
                      7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33289365IPR003657WRKY domain
SuperFamilySSF1182901.24E-27297365IPR003657WRKY domain
PROSITE profilePS5081129.516299365IPR003657WRKY domain
SMARTSM007744.9E-36304364IPR003657WRKY domain
PfamPF031061.2E-26306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MELGSSHVRI HFSDFAGKEE GEMSTGHTVM DAASPPAASP EGDGAKQRVE EMDFFSGEKR  60
CKAGAPPLEE LDHKKELAHS VNIGLHLQTG GGGGDESTVE DGMPMSEEKG GKGEVVEMQA  120
ALARMNEENR LLKGVLSRVA ADYNALQMHI VQLSQPSRRH GHEILQEDEA VERKNYDGWV  180
HPIVPSRFID LRPAGVAPTG GEEASYSSTE MGSPAKGGAP SNNVEVVSTS YHRQRSVSSG  240
VINPKMVNVD QGKQPGEVNA IGREDSARRE PQGPSRSIIT GQLTEATMRK ARVSVRARSE  300
APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAGGCPVRK QVQRCAEDRS ILTTTYEGKH  360
NHPLPPPAMA MASTTSAAAS MLLSGSMPSG DGLMGGNFLT RTLMPFSSGM ASISASAPFP  420
TVTLDLTHAP SSHHFQRPQL PPVAVATAAN FNVPVAGAAA PPQIFGKALY NQTNPAQHQP  480
TSFNDTVTAA ITSDPNFTAA VAAAITSIIG GAATPSNLLG GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22291366175WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.11e-156PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A1U7ZFH61e-154A0A1U7ZFH6_NELNU; probable WRKY transcription factor 31
STRINGXP_010252466.11e-155(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.13e-82WRKY DNA-binding protein 31