PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo24G0006700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 24330.6 Da PI: 8.8226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cgk F++ L H +H Spipo24G0006700 79 HKCNVCGKAFPSYQALGGHKASH 101 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.61E-9 | 78 | 101 | No hit | No description |
SMART | SM00355 | 0.013 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-13 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.61E-9 | 134 | 161 | No hit | No description |
Pfam | PF13912 | 1.6E-10 | 138 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 139 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.74 | 139 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 141 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
VAMVMEAPKV SSMGGACEVA EAHCPETWSK GKRSKRHRFY DRQPTEEEYL ALCLVMLARG 60 GPAERAPPPR ATSPEKLPHK CNVCGKAFPS YQALGGHKAS HRRLVTGAED GVSSSGATAS 120 ASSGSAAAVA APPGGGRVHQ CSICLRCFPS GQALGGHKRL HYDGGTTAHN ATGAAVSSSS 180 GTSSTLRNFD LNLPALPEFL ADGAATALRR CVAAEEDEVQ SPLAFKKPRL LIPA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792675.1 | 9e-78 | zinc finger protein ZAT10 | ||||
TrEMBL | A0A2H3Y333 | 2e-76 | A0A2H3Y333_PHODC; zinc finger protein ZAT10 | ||||
STRING | XP_008792675.1 | 3e-77 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-37 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Spipo24G0006700 |