PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0043000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 347aa    MW: 37922.6 Da    PI: 8.7677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0043000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-321774260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  +++++ei+Y+g Hnh+k
  Spipo23G0043000 17 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERNL-EGQITEIVYKGAHNHPK 74
                     8****************************************.***************85 PP
2WRKY106.51.4e-33183241159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d+++v++tYeg+Hnh+
  Spipo23G0043000 183 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSMGCPVRKHVERASHDTRAVVTTYEGKHNHD 241
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28675IPR003657WRKY domain
PROSITE profilePS5081123.4791175IPR003657WRKY domain
SuperFamilySSF1182906.67E-251375IPR003657WRKY domain
SMARTSM007741.8E-341674IPR003657WRKY domain
PfamPF031065.0E-251773IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37168243IPR003657WRKY domain
SuperFamilySSF1182901.02E-29175243IPR003657WRKY domain
PROSITE profilePS5081138.813178243IPR003657WRKY domain
SMARTSM007743.1E-39183242IPR003657WRKY domain
PfamPF031067.9E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTSNMQSLQT QKEQRSDDGY NWRKYGQKQV KGSENPRSYY KCTYPSCPTK KKVERNLEGQ  60
ITEIVYKGAH NHPKPQSTRR NSLSQLGQQT VSTEGSDHSF GGRVAPPMDS VATPENSSVS  120
FGDDDLELSS QRSRSGGEDL DDDEPDAKRW KQEGDGEGIS GSGNRTVREP KVVVQTTSDI  180
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT SMGCPVRKHV ERASHDTRAV VTTYEGKHNH  240
DVPPARGSGA QQIIRPSTEN GNITMAIRPS ATAGGSHFRG TGDQVGPSGA ALEARQAAPE  300
KSYAYPAGVP SYANYQQQTR GFHAPADEGG DEGRQALRVA TLLNMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-362243277Probable WRKY transcription factor 4
2lex_A1e-362243277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921056.11e-159WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-127WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1D1Z5I91e-153A0A1D1Z5I9_9ARAE; Putative WRKY transcription factor 33
STRINGXP_008804160.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-105WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]