PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0034900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 649aa    MW: 69388.9 Da    PI: 6.9548
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0034900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08246266526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  Spipo23G0034900 246 PCPEFRK-GSCRNGDACEYAHG 266
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.73E-1352132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96355130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00945585IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.3E-1557137IPR020683Ankyrin repeat-containing domain
PfamPF127969.4E-857123IPR020683Ankyrin repeat-containing domain
CDDcd002044.11E-1057130No hitNo description
PROSITE profilePS5008811.96890125IPR002110Ankyrin repeat
SMARTSM002480.001390122IPR002110Ankyrin repeat
SMARTSM003564.7E-4241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4245268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056246268IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6246266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4274305IPR000571Zinc finger, CCCH-type
SMARTSM0035631276299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944276300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAITANSPAM RGPILLELSA ADDLPGFRRA LEEGRLEVDL PAPWYGRWGR AMGFELRTPL  60
MIAAMYGSVA VLEYILTVGT VDVNRACGSD GATPLHCAAA GGSPASADAV RMLIDASADV  120
TAVDGEGNKP GDVIPRCLAS EGSSSRIRSL KALLRVGAAS ATAAGEEDSS PSKREEKKRE  180
KEYPPDLTLP DIKNGIYSTD EFRMYTFKVK PCSRAYSHDW TECPFVHPGE NARRRDPRKY  240
HYTCVPCPEF RKGSCRNGDA CEYAHGVFEC WLHPAQYRTR LCKDETGCTR RVCFFAHKPE  300
ELRQPGHSSS APPQSPSGSV LPSPRSPALP PLDVTTAAAM LMNQSMASSS ASSSAAASAA  360
AWLSQTGGMM TPTLKLPTSR LKTSLSSRNM EVDLDLMGLE AYHQQQQQQQ VDDMATMSSP  420
SGWKFSLGGA SPPSGYGDVY GSPESSSLLS QLQGLSMRHS MAGGTAQFQS PSGIQMHQSN  480
ISQQLPPGYA GSNPSSSLSS SFGLHTLATT IMNSKASAFA KRSQSFCDRG PTARPSALGM  540
ASFAAPAPAP SLSDWASPDG KLDWGIRGEE LSKLRKCASF GFRSNGNAAA ATTEEPDVSW  600
VHPLVKDGGG VAEPPRQQQR YEATRANEFS SSVTDMFSPW MDQEQLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278571.10.0zinc finger CCCH domain-containing protein 66
TrEMBLA0A061GWD40.0A0A061GWD4_THECC; Zinc finger family protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-139C3H family protein