PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0030300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 456aa    MW: 50275 Da    PI: 7.9212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0030300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31197254260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkk+ers  ++++  i+Y+geHnh+k
  Spipo23G0030300 197 HDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKIERSL-NGQIEGIIYRGEHNHPK 254
                      7****************************************.***************85 PP
2WRKY101.54.9e-32375431359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK+vkg+++prsYY+C+ ++C+v+k+ver+ +dp+ v++tYeg+Hnhe
  Spipo23G0030300 375 DGYQWRKYGQKVVKGNPYPRSYYKCSAPKCNVRKHVERAWDDPNSVITTYEGKHNHE 431
                      9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-28189255IPR003657WRKY domain
PROSITE profilePS5081123.858191255IPR003657WRKY domain
SuperFamilySSF1182908.63E-25194255IPR003657WRKY domain
SMARTSM007741.5E-33196254IPR003657WRKY domain
PfamPF031062.1E-23198253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-32360433IPR003657WRKY domain
PROSITE profilePS5081132.719368433IPR003657WRKY domain
SuperFamilySSF1182904.18E-28369433IPR003657WRKY domain
SMARTSM007744.1E-36373432IPR003657WRKY domain
PfamPF031066.3E-25375431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDAKDEDRPV IARPVASRPF SKFRSFTEFL TDAIHASPPA LDVEMPVPIK PKITRLTTSA  60
KCSSVDDFLS MDGDSTSTML DSCGNYAVRP SRSDGNLNFI HKPAAKLVSR SAVLLENMGD  120
TNMCFPTMSE QLPTQIQHPE KRKRQLQSPQ TFIADQGQET QFNALRQSME PPKNFARTLE  180
EDLKPQLAMN SGDQISHDGY NWRKYGQKQV KGSEYPRSYY KCTHPSCPVK KKIERSLNGQ  240
IEGIIYRGEH NHPKPQPSKR FQSASQGRSA SDGFGRDDGA QPLTNEESEG RGESASEVGC  300
SITDSYSGKA LTYGEPAAEP AYSTQIGTSG SCGFGGVVCE EEPDERSSKG RGIAKALPES  360
HTVVQNSPES GVTGDGYQWR KYGQKVVKGN PYPRSYYKCS APKCNVRKHV ERAWDDPNSV  420
ITTYEGKHNH EMPAINPNLD GSEQEPLTAA KKPRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-31198434878Probable WRKY transcription factor 4
2lex_A3e-31198434878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YUJ91e-166A0A1D1YUJ9_9ARAE; WRKY transcription factor 44
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1847669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.19e-76WRKY family protein