PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo22G0043500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 423aa MW: 45990.4 Da PI: 10.0287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo22G0043500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	165	188	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F+r+++L H+ t H Spipo22G0043500 165 FPCTSCGEVFTRSHLLDFHQATrH 188 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.367	165	193	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	188	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.21E-7	190	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.3E-7	191	421	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MGGLRKSIFA IVGSLFFLLF HLGCIFFPPA AISHPPPSRG RRRRRRRRGR NASPLSSQPQ 60 RRPSAVSAPH EPRGSFSLSL RSILRHLVCC FFGPDSQQHK RRPHVAAIGP LPSTQQQLRH 120 HLVFPEEASA NPKAIASSRF PEKPDDLTRI ASLKLSSFPS RDDVFPCTSC GEVFTRSHLL 180 DFHQATRHTL SELTDGDSGL NIVRIIFQSG WKGRRGKESD RVDNSVVPVV HRVLKIHSSP 240 RMLARFEEYR DSVRSRAAAR WAAGCGGSAD ERCMADGNER LRFYCATFLC GLTQEGGNLG 300 ICGSPFCSAC GIVQRGFAGK DADGVATHAT GWGAHSHPSL PEELEREFES MKVRRAMLVC 360 RVIAGRVALG GAGAAGDGEG GRGTYDSVVA AERGGGGWAA EDLLLVFDPR AVLPCFVIIY 420 SV*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MGGLRKSIFA IVGSLFFLLF HLGCIFFPPA AISHPPPSRG RRRRRRRRGR NASPLSSQPQ  60
RRPSAVSAPH EPRGSFSLSL RSILRHLVCC FFGPDSQQHK RRPHVAAIGP LPSTQQQLRH  120
HLVFPEEASA NPKAIASSRF PEKPDDLTRI ASLKLSSFPS RDDVFPCTSC GEVFTRSHLL  180
DFHQATRHTL SELTDGDSGL NIVRIIFQSG WKGRRGKESD RVDNSVVPVV HRVLKIHSSP  240
RMLARFEEYR DSVRSRAAAR WAAGCGGSAD ERCMADGNER LRFYCATFLC GLTQEGGNLG  300
ICGSPFCSAC GIVQRGFAGK DADGVATHAT GWGAHSHPSL PEELEREFES MKVRRAMLVC  360
RVIAGRVALG GAGAAGDGEG GRGTYDSVVA AERGGGGWAA EDLLLVFDPR AVLPCFVIIY  420
SV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	45	RGRRRRRR
2	38	47	RGRRRRRRRR
3	40	47	RRRRRRRR
4	41	47	RRRRRRR
5	42	49	RRRRRRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663481.1	2e-98	uncharacterized protein LOC103715055
TrEMBL	A0A1D1XG74	1e-122	A0A1D1XG74_9ARAE; Gastrula zinc finger protein xFG20-1
STRING	XP_008800782.1	9e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10517	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-66	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo22G0043500