PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo22G0039600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 120aa MW: 13585.2 Da PI: 9.3471 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.4e-06 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Spipo22G0039600 28 YSCSFCGREFRSAQALGGHMNVH 50 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.68E-7 | 25 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 26 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.217 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-6 | 28 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.002 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
AVASWEEKAI GEDSASQLGE YAWPPRSYSC SFCGREFRSA QALGGHMNVH RRDRARLKQS 60 SAGNEEKRRL LLRQQQHHLQ NSFSKSRCTP YEVVAPPRSP SLDNCGDQKM ICLSYSSRLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 23 | 50 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 23 | 50 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022744579.1 | 3e-29 | zinc finger protein 10-like | ||||
TrEMBL | A0A200R533 | 7e-28 | A0A200R533_9MAGN; Zinc finger protein | ||||
TrEMBL | A0A2I0WAY3 | 5e-28 | A0A2I0WAY3_9ASPA; Putative transcriptional regulator RABBIT EARS | ||||
STRING | EOY07444 | 1e-27 | (Theobroma cacao) | ||||
STRING | GSMUA_Achr2P16470_001 | 9e-28 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 3e-24 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Spipo22G0039600 |