PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G37740.1
Common NameATZFP10, ZFP10
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 304aa    MW: 34125.2 Da    PI: 8.4721
Description zinc-finger protein 10
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G37740.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-053961123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  AT2G37740.1 39 YTCSFCRREFKSAQALGGHMNVH 61
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-63665No hitNo description
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-53962IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKPGGFWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFKS AQALGGHMNV  60
HRRDRARLKQ ADDQYLFPKS SSSPEYPSHK DSDNIHETSC YTLVFNTKPN YFKTQHSCVI  120
DLSSSSSLPY LTPSRVSSGL PGKQHTSSSP PSFVVEPSKN SKYIPSSSPW SCPSTVVEQK  180
SCDLYEIPAM EGEKKRKTES DVPKIGHKAK LSLGNTTDLS VSMNLVIHQS FPITAHGSDE  240
EIGRVDIRKR RRRHESPSQQ SIFISSLSCK SDIITRNEES KHKGDRFEDL DLELRLGTDP  300
PKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-133461229superman protein
2l1o_A7e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251RKRRR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO223262190.0
Genevisible267167_at0.0
Expression AtlasAT2G37740-
AtGenExpressAT2G37740-
ATTED-IIAT2G37740-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G37740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G37740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181310.10.0zinc-finger protein 10
SwissprotO809420.0ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A178VU740.0A0A178VU74_ARATH; ZFP10
STRINGAT2G37740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Representative plantOGRP5761581
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dinkins R,Pflipsen C,Thompson A,Collins GB
    Ectopic expression of an Arabidopsis single zinc finger gene in tobacco results in dwarf plants.
    Plant Cell Physiol., 2002. 43(7): p. 743-50
    [PMID:12154136]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]