PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo22G0018300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 197aa MW: 21771 Da PI: 9.8776 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.4 | 8e-34 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Spipo22G0018300 52 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLKVMGVPGLTIYHVKSHLQKYRL 106 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.346 | 51 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-17 | 51 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-26 | 52 | 107 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.9E-32 | 52 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-8 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.0E-24 | 139 | 184 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGGEKELKMY SKKFATMALM PHRSQGDEQL SNIGALRGSP VNSTASSGVG GKQRLRWTSD 60 LHDRFVDAIT QLGGPDRATP KGVLKVMGVP GLTIYHVKSH LQKYRLAKYL PESPADGLKD 120 EKKDCSDGLG NLDPASGLQI TEALKMQMEV QKRLHEQLEV QRQLQMRIEA QGRYLQKIIE 180 EQQKLGSYVG VNEPGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-26 | 51 | 109 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922093.1 | 1e-101 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-72 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1D1XPS5 | 1e-103 | A0A1D1XPS5_9ARAE; Myb family transcription factor APL | ||||
STRING | XP_010251692.1 | 1e-100 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-75 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo22G0018300 |