PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G01060.1 | ||||||||
Common Name | F23H14.3, PHL7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 286aa MW: 31074.7 Da PI: 5.8408 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.6e-34 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl AT2G01060.1 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.303 | 12 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-32 | 14 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-18 | 14 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-25 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 17 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-23 | 101 | 147 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEADNGGPNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD MLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLGEPSAPVT GDSDPATPAP TSESPLQDKS 180 GKDCGPDKSL SVDESLSSYR EPLTPDSGCN IGSPDESTGE ERLSKKPRLV RGAAGYTPDI 240 VVGHPILESG LNTSYHQSDH VLAFDQPSTS LLGAEEQLDK VSGDNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-24 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-24 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-24 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-24 | 15 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24449 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262203_at | 0.0 | ||||
Expression Atlas | AT2G01060 | - | ||||
AtGenExpress | AT2G01060 | - | ||||
ATTED-II | AT2G01060 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G01060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G01060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370550 | 0.0 | AF370550.1 Arabidopsis thaliana transfactor-like protein (At2g01060; F23H14.3) mRNA, complete cds. | |||
GenBank | BT000013 | 0.0 | BT000013.1 Arabidopsis thaliana transfactor-like protein (At2g01060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178216.1 | 0.0 | myb-like HTH transcriptional regulator family protein | ||||
Swissprot | Q9SJW0 | 0.0 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A178VZU9 | 0.0 | A0A178VZU9_ARATH; Uncharacterized protein | ||||
STRING | AT2G01060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8753 | 25 | 36 | Representative plant | OGRP78 | 17 | 262 |
Link Out ? help Back to Top | |
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Phytozome | AT2G01060.1 |
Entrez Gene | 814630 |
iHOP | AT2G01060 |
wikigenes | AT2G01060 |
Publications ? help Back to Top | |||
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