PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo22G0014700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 22634.3 Da PI: 6.8004 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.2 | 6.2e-16 | 71 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ rg+W+AeIrdp++ r +lg++ +e+Aa+a++aa+++++g Spipo22G0014700 71 YRGIRRRA-RGKWAAEIRDPRK---GVRAWLGTYSNPEDAARAYDAAAREIRG 119 9****887.8*********954...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-20 | 70 | 128 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.655 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 70 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-30 | 70 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-9 | 71 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-15 | 71 | 128 | No hit | No description |
PRINTS | PR00367 | 1.8E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 109 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MCGGAIISEF IAFREAALRR GGDPTKKGLT SSRGGGGPDA LRCSGFEGDP RPWGSDNLSP 60 APEKKVEKKA YRGIRRRARG KWAAEIRDPR KGVRAWLGTY SNPEDAARAY DAAAREIRGK 120 KAKLNFPAGE PAPPPVPEKS DEPAAAEERP SDAELKQRIS SLEYLLGLEP DEGSSGVEAA 180 VGGGALDGLS PSDDVAMALE RDHHLLDLLH NL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 67 | 165 | 11 | 110 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-21 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo22G0014700 |